WALNUT CREEK, CA--An enhanced version of Phytozome.net, a web portal for comparative plant genomics geared to advance biofuel, food, feed, and fiber research, has been released by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI).
Phytozome provides a central “hub” for web access to a rapidly growing number of plant genomes, and includes tools for visualization of plant genomes and associated annotations, sequence analysis, and bulk, as well as targeted, plant data retrieval. The gene families available in Phytozome, defined at several evolutionarily significant epochs, provide a framework for the transfer of functional information to important biofuel and agricultural crops from model plant systems, as well as allowing users to explore land plant evolution.
The 4.0 release of Phytozome now spans fourteen plant genomes, including eight that have been sequenced at the DOE JGI:
Phytozome also includes the completed sequences of rice, papaya, grape, Medicago (the genus which includes alfalfa as a member), Arabidopsis thaliana, as well as maize bacterial artificial chromosome (BAC) sequences from the Maize Genome Sequencing Project (http://www.maizesequence.org).
Phytozome, accessible to the public at www.phytozome.net, is a collaboration between scientists at the DOE JGI, Lawrence Berkeley National Laboratory, and the University of California, Berkeley Center for Integrative Genomics. It was developed with funding from the Department of Energy, the National Science Foundation, the National Institutes of Health, and the Gordon and Betty Moore Foundation.
The U.S. Department of Energy Joint Genome Institute, supported by DOE’s Office of Science, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI, headquartered in Walnut Creek, Calif., provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. Additional information about DOE JGI can be found at:
David E. Gilbert
Public Affairs Manager
DOE Joint Genome Institute
2800 Mitchell Drive
Walnut Creek, CA 94598