Genomic Science Program. Click to return to home page.

Genomic Science Program

Systems Biology for Energy and the Environment

Department of Energy Office of Science. Click to visit main DOE SC site.

Genomic Science Program

Plant Feedstock Genomics for Bioenergy



tree and grass logo

USDA and DOE Fund Nine New Projects for Biomass Genomics Research

The U.S. Department of Energy's Office of Science, Office of Biological and Environmental Research, and the U.S. Department of Agriculture (USDA) National Institute of Food and Agriculture’s Agriculture and Food Research Initiative* have jointly selected nine projects for awards totaling $9 million for biobased-fuel research. These awards continue a commitment begun in 2006 to conduct fundamental research in biomass genomics that will establish a scientific foundation to facilitate and accelerate the use of woody plant tissue for bioenergy and biofuel.

2010 Awards

In 2010, DOE will provide $7 million in funding over 3 years, while USDA will award $2 million over 3 years.

Genome-Wide Analysis of miRNA Targets in Brachypodium and Biomass Energy Crops

  • University of Delaware, Newark, $868,794
  • Principal Investigator: Pamela J. Green
  • DOE-funded project

Project Goal: Identify the targets of MicroRNAs (miRNAs) in different organs and under adverse environmental conditions in the model grass Brachypodium and in the energy crops switchgrass, Miscanthus, and sorghum. miRNAs are important regulatory molecules that repress selected “target” genes to enable normal development, stress responses, and other processes. This project should enhance understanding of regulatory networks and may suggest new strategies for improving biomass energy crops.

Organ and Tissue-Specific Sucrose Transporters: Important Hubs in Gene and Metabolite Networks Regulating Carbon Use in Wood-Forming Tissues of Populus

  • University of Georgia, Athens, $1,340,000
  • Principal Investigator: Scott A. Harding
  • DOE-funded project

Project Goal: Investigate how sucrose transporter proteins (SUTs) function to facilitate the distribution of sucrose for transient storage and biosynthetic use among different pathways in the developing wood matrix. Wood for lignocellulosic feedstocks is synthesized from sucrose that is exported from leaves and then processed in the wood-forming organs. SUTs mediate the export and efficient movement of sucrose from source leaves to sink organs in all plant species.

The Role of Small RNA in Biomass Deposition and Perenniality in Andropogoneae Feedstocks

  • Energy Bioscience Institute, University of Illinois at Urbana-Champaign, $1,165,900
  • Principal Investigator: Matthew E. Hudson
  • DOE-funded project

Project Goal: Investigate the role of small RNA molecules in biomass production and their importance in the regulation of cellulose and lignin biosynthesis. The tissues and organs of next-generation biofuel crops that provide biomass for energy production are primarily composed of lignin and cellulose. This research will focus on Miscanthus species as well as other biomass crops including switchgrass and prairie cordgrass.

Development of a Low Input and Sustainable Switchgrass Feedstock Production System Utilizing Beneficial Bacterial Endophytes

  • The Institute for Advanced Learning and Research, $734,759
  • Principal Investigator: Chuansheng Mei
  • DOE-funded project

Project Goal: Understand the molecular and physiological mechanisms by which interaction with bacterial endophytes promotes growth in the promising bioenergy crop switchgrass. The use of naturally occurring beneficial bacterial endophytes with switchgrass represents a practical and feasible way to develop a low-input and sustainable feedstock production system.

Functional Analysis of Regulatory Networks Linking Shoot Maturation, Stem Carbon Partitioning, and Nutrient Utilization in Sorghum

  • University of Illinois at Urbana-Champaign, $1,000,000
  • Principal Investigator: Stephen Moose
  • USDA-funded project

Project Goal: Determine if changes in the Glossy15 gene system of sorghum might contribute to current physiological differences among grain, sweet and biomass sorghums, and whether this gene can be used to convert superior sorghum grain hybrids to cultivars enhanced for bioenergy production.

Genomics of Energy Sorghum Biomass Accumulation

  • Texas A&M University, College Station, $1,000,000
  • Principal Investigator: John Mullet
  • USDA-funded project

Project Goal: Identify the genetic and biochemical basis for increasing yield and improving the composition of high-biomass cellulosic energy sorghum. Select genotypes will be analyzed for stem biomass yield, structure, and composition. The resources developed will enable analysis of the genes that modulate these traits and facilitate improvement of energy sorghum and other bioenergy grasses.

Identification and Genetic Characterization of Maize Cell-Wall Variation for Improved Biorefinery Feedstock Characteristics

  • University of California, Berkeley, $793,413
  • Principal Investigator: Markus Pauly
  • DOE-funded project

Project Goal: Identify and characterize maize lines with enhanced biorefinery feedstock characteristics, particularly those containing higher yields of fermentable sugars. Stover, the material from the corn plant that remains after removal of the grain, consists primarily of cellulose, hemicellulose, and lignin. Because corn stover is generated by U.S. agriculture in significant amounts, this lignocellulosic residue is desirable to use as a biofuel source.

Systems View of Root Hair Response to Abiotic Stress

  • University of Missouri, Columbia, $1,106,656
  • Principal Investigator: Gary Stacey
  • DOE-funded project

Project Goal: Gain insight into the impacts of variations in temperature and water availability on nutrient uptake by root cells. Root hair cells function to increase root surface area and to mediate water and nutrient uptake. The data obtained in this project should provide a better understanding of the impacts of climate change (heat and water limitation) on plant root physiology.

Insertional Mutagenesis of Brachypodium distachyon

  • USDA Agricultural Research Service Western Regional Research Center, Albany, California, $949,348
  • Principal Investigator: John P. Vogel
  • DOE-funded project

Project Goal: Generate 30,000 additional insertional mutants in the model grass Brachypodium distachyon and sequence DNA flanking the insertion sites. Insertional mutants are a powerful research tool that allow researchers to rapidly determine the function of specific genes. Mutants from outside collaborators will be integrated into this collection and made available through a public database.

View Awards by Year

*formerly the Cooperative State Research, Education, and Extension Service (CSREES), National Research Initiative


Genomics-Enabled Plant Biology for Determination of Gene Function Summary of Projects Awarded

Plant Feedstock Genomics for Bioenergy [01/19]

Lignocellulosic Biomass for Advanced Biofuels and Bioproducts: Workshop Report [2/15]

Publication Highlights

  • Publication Highlights »
  • Search Highlights »