Genomic Science Program. Click to return to home page.

Genomic Science Program

Systems Biology for Energy and the Environment

Department of Energy Office of Science. Click to visit main DOE SC site.

Genomic Science Program

Research for Sustainable Bioenergy:
Linking Genomic and Ecosystem Sciences

Report from the October 2013 Workshop

May 2014

Download full document:

The design of sustainable biofuel systems requires knowledge about key plant-microbe-environment interactions that provide a range of ecosystem services. Most critical is a mechanistic understanding of how candidate biofuel plants interact with biotic and abiotic factors to affect the ecosystem outcomes that define sustainability. Recent advances in the genomic sciences can contribute immensely to the knowledge needed to design such systems. For example, progress in plant genomics will enable the inclusion of sustainability traits in future feedstocks, and advances in microbial genomics will allow insights into plant-microbe-soil interactions that might be used to manage and support plant productivity and vigor. Linking these advances to breakthroughs in ecosystem science enables the use of systems biology in the fundamental design of sustainable biofuel systems.

To identify research opportunities in developing such systems, the Department of Energy's (DOE) Office of Biological and Environmental Research (BER) held the Research for Sustainable Bioenergy Workshop on Oct. 2-4, 2013, in Germantown, Maryland. The workshop convened more than 30 researchers with a broad and diverse range of expertise, including ecology, microbiology, plant genetics, genomics, computational biology, and modeling. Participants discussed and identified research gaps, challenges, and opportunities for enhancing the understanding of influences that biotic, abiotic, and genetic factors have on long-term plant feedstock performance and the delivery of ecosystem services at multiple scales. This report identifies the key topics and questions that could be addressed effectively to achieve this understanding. Research opportunities are organized into four categories: (1) plant systems, encompassing plant productivity, resource use efficiency, genotype/phenotype breeding, and crop diversity; (2) the plant microbiome, which includes microbes living in close association within or adjacent to plants; (3) ecosystem processes, such as carbon capture, greenhouse gas mitigation, and hydrologic processes; and (4) multiscale modeling, which integrates and extends results across spatiotemporal scales.

Suggested citation: U.S. DOE. 2014. Research for Sustainable Bioenergy: Linking Genomic and Ecosystem Sciences, Workshop Report, DOE/SC-0167. U.S. Department of Energy Office of Science.

BER Program Manager for Sustainability Research

Cathy Ronning
U.S. Department of Energy
Office of Biological and Environmental Research
Phone: 301-903-9549


Systems Biology Enabled Research to Advance Sustainable Bioenergy Crop Development Processes Summaries of Projects Awarded by Year

Research for Sustainable Bioenergy Workshop [10/13]

Publication Highlights

  • Publication Highlights »
  • Search Highlights »