Genomic Science Program
U.S. Department of Energy | Office of Science | Biological and Environmental Research Program

2023 Abstracts

Improved Biofuel Production Through Discovery and Engineering of Terpene Metabolism in Switchgrass


Kira Tiedge1,2* ([email protected]), Gabby Wyatt1*, and Philipp Zerbe1


1University of California–Davis; and 2University of Groningen


Of the myriad specialized metabolites that plants form to adapt to environmental challenges, terpenoids form the largest group. In many major crops, unique terpenoid blends serve as key stress defenses that directly impact plant fitness and yield. In addition, select terpenes are used for biofuel manufacture. Thus, engineering of terpenoid metabolism can provide a versatile resource for advancing biofuel feedstock production but requires a system-wide knowledge of the diverse biosynthetic machinery and defensive potential of often species-specific terpenoid blends. This project merges genome-wide enzyme discovery with comparative omics and protein structural studies to define the biosynthesis and stress-defensive functions of switchgrass (Panicum virgatum) terpenoid metabolism. These insights would be combined with the development of genome editing tools to design plants with desirable terpene blends for improved biofuel production on marginal lands.


Diterpenoids form a diverse class of metabolites with critical functions in plant development, defense, and ecological adaptation. Major monocot crops, such as maize (Zea mays) and rice (Oryza sativa), deploy diverse blends of specialized diterpenoids as core components of biotic and abiotic stress resilience. This project reports the genome-wide discovery and functional characterization of the stress-related diterpenoid-metabolic network in switchgrass (P. virgatum). Mining of the allotetraploid switchgrass genome identified expansive diterpene synthase (diTPS) and cytochrome P450 monooxygenase (P450) enzyme families critical for the chemical diversity of bioactive diterpenoids. Tissue-specific transcriptome and metabolite analyses of drought-resistant (Alamo) and drought-susceptible (Cave-in-Rock) genotypes showed an earlier onset of transcriptomic changes and significantly more differentially expressed genes in response to drought in Cave-in-Rock. Diterpenoid-biosynthetic genes showed drought-inducible expression in Alamo roots, contrasting largely unaltered triterpenoid and phenylpropanoid pathways. In addition, metabolomic analyses identified common and genotype-specific terpenoids. Consistent with transcriptomic alterations, several root diterpenoids showed significant drought-induced accumulation. Structural analysis of drought-responsive root diterpenoids verified these metabolites as oxygenated furanoditerpenoids that are perhaps unique to switchgrass. Together, these findings support a role of diterpenoids in switchgrass drought stress tolerance and provide resources for understanding the molecular mechanisms underlying switchgrass environmental resilience.


Muchlinski, A., et al. 2021. “Cytochrome P450-Catalyzed Biosynthesis of Furanoditerpenoids in the Bioenergy Crop Switchgrass (Panicum virgatum L.),” The Plant Journal 108, 1053–68.

Pelot, K. A., et al. 2018. “Functional Diversity of Diterpene Synthases in the Biofuel Crop Switchgrass,” Plant Physiology 178, 54–71.

Tiedge, K., A. Muchlinski, and P. Zerbe. 2020. “Genomics-Enabled Analysis of Specialized Metabolism in Bioenergy Crops: Current Progress and Challenges,” Synthetic Biology 5, ysaa005.

Tiedge, K., et al. 2022a. “Comparative Transcriptomics and Metabolomics Reveal Specialized Metabolite Drought Stress Responses in Switchgrass (Panicum virgatum),” New Phytologist 236, 1393–408.

Tiedge, K., et al. 2022b. “Foxtail Mosaic Virus-Induced Gene Silencing (VIGS) in Switchgrass (Panicum virgatum L.),” Plant Methods 18, 71.

Funding Information

Financial support for this work was provided by the U.S. Department of Energy (DOE) Early Career Research Program (DE-SC0019178, to PZ), the German Research Foundation (DFG) Research Fellowship (TI 1075/1-1, to KT), and the DOE Joint Genome Institute (JGI) DNA Synthesis Science Program (grant #2568, to PZ). The gene synthesis work conducted by the U.S. Department of Energy JGI, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.