Genomic Science Program
U.S. Department of Energy | Office of Science | Biological and Environmental Research Program

Archival Publications List: The First DOE Bioenergy Research Centers (2007-2018)

201810.1002/bit.26530Alonso-Gutierrez, J., D. Koma, Q. Hu, Y. Yang, L. J. G. Chan, C. J. Petzold, P. D. Adams, C. E. Vickers, L. K. Nielsen, J. D. Keasling, and T. S. Lee. 2018. Toward industrial production of isoprenoids in Escherichia coli: Lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway, Biotechnol Bioeng 115(4), 1000-1013. JBEI
201810.1007/s11101-017-9530-4Banerjee, A., and B. Hamberger. 2018. P450s controlling metabolic bifurcations in plant terpene specialized metabolism, Phytochem Rev 17(1), 81-111. GLBRC
201810.1111/pbi.12747Baxter, H. L., M. Mazarei, A. Dumitrache, J. M. Natzke, M. Rodriguez, Jr., J. Gou, C. Fu, R. W. Sykes, G. B. Turner, M. F. Davis, S. D. Brown, B. H. Davison, Z. Y. Wang, and C. N. Stewart, Jr. 2018. Transgenic miR156 switchgrass in the field: growth, recalcitrance and rust susceptibility, Plant Biotechnol J 16(1), 39-49. BESC
201810.1002/yea.3292Dossani, Z. Y., A. Reider Apel, H. Szmidt-Middleton, N. J. Hillson, S. Deutsch, J. D. Keasling, and A. Mukhopadhyay. 2018. A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering, Yeast 35(3), 273-280. JBEI
201810.1093/nar/gkx893Eng, C. H., T. W. H. Backman, C. B. Bailey, C. Magnan, H. Garcia Martin, L. Katz, P. Baldi, and J. D. Keasling. 2018. ClusterCAD: a computational platform for type I modular polyketide synthase design, Nucleic Acids Res 46(D1), D509-D515. JBEI
2018 10.1111/pbi.12841Gou, J., S. Debnath, L. Sun, A. Flanagan, Y. Tang, Q. Jiang, J. Wen, and Z. Y. Wang. 2018. From model to crop: functional characterization of SPL8 in M. truncatula led to genetic improvement of biomass yield and abiotic stress tolerance in alfalfa, Plant Biotechnol J 16(4), 951-962. BESC
201810.1016/j.copbio.2017.10.004Hittinger, C. T., J. L. Steele, and D. S. Ryder. 2018. Diverse yeasts for diverse fermented beverages and foods, Curr Opin Biotechnol 49, 199-206. GLBRC
201810.1038/s41564-017-0052-zKolinko, S., Y. W. Wu, F. Tachea, E. Denzel, J. Hiras, R. Gabriel, N. Backer, L. J. G. Chan, S. A. Eichorst, D. Frey, Q. Chen, P. Azadi, P. D. Adams, T. R. Pray, D. Tanjore, C. J. Petzold, J. M. Gladden, B. A. Simmons, and S. W. Singer. 2018. A bacterial pioneer produces cellulase complexes that persist through community succession, Nat Microbiol 3(1), 99-107. 10.1038/s41564-017-0052-z.JBEI
201810.1016/j.biombioe.2017.02.003Landis, D. A., C. Gratton, R. D. Jackson, K. L. Gross, D. S. Duncan, C. Liang, T. D. Meehan, B. A. Robertson, T. M. Schmidt, K. A. Stahlheber, J. M. Tiedje, and B. P. Werling. 2018. Biomass and biofuel crop effects on biodiversity and ecosystem services in the North Central US, Biomass and Bioenergy 114, 18-29. GLBRC
201810.1002/cssc.201701902Liu, D., K. H. Kim, J. Sun, B. A. Simmons, and S. Singh. 2018. Cascade Production of Lactic Acid from Universal Types of Sugars Catalyzed by Lanthanum Triflate, ChemSusChem 11(3), 598-604. JBEI
201810.1002/biot.201600433.Meadows, C. W., A. Kang, and T. S. Lee. 2018. Metabolic Engineering for Advanced Biofuels Production and Recent Advances Toward Commercialization, Biotechnol J 13(1). JBEI
201810.1093/bioinformatics/btx564Mendoza, B. J., and C. T. Trinh. 2018. Enhanced guide-RNA design and targeting analysis for precise CRISPR genome editing of single and consortia of industrially relevant and non-model organisms, Bioinformatics 34(1), 16-23. BESC
201810.1002/bbb.1821.Ng, R. T. L., S. Patchin, W. Wu, N. Sheth, and C. T. Maravelias. 2018. An optimization-based web application for synthesis and analysis of biomass-to-fuel strategies, Biofuels, Bioproducts and Biorefining 12(2), 170-176. GLBRC
201810.1007/s10529-017-2467-2Oguntimein, G. B., M. Rodriguez, Jr., A. Dumitrache, T. Shollenberger, S. R. Decker, B. H. Davison, and S. D. Brown. 2018. Anaerobic microplate assay for direct microbial conversion of switchgrass and Avicel using Clostridium thermocellum, Biotechnol Lett 40(2), 303-308. BESC
201810.1111/1477-9552.12233Skevas, T., I. Skevas, and S. M. Swinton. 2018. Does Spatial Dependence Affect the Intention to Make Land Available for Bioenergy Crops?, Journal of Agricultural Economics 69(2), 393-412. GLBRC
201810.1002/cssc.201701798Sun, J., D. Liu, R. P. Young, A. G. Cruz, N. G. Isern, T. Schuerg, J. R. Cort, B. A. Simmons, and S. Singh. 2018. Solubilization and Upgrading of High Polyethylene Terephthalate Loadings in a Low-Costing Bifunctional Ionic Liquid, ChemSusChem 11(4), 781-792. JBEI
201810.1093/molbev/msx315Vakirlis, N., A. S. Hebert, D. A. Opulente, G. Achaz, C. T. Hittinger, G. Fischer, J. J. Coon, and I. Lafontaine. 2018. A Molecular Portrait of De Novo Genes in Yeasts, Mol Biol Evol 35(3), 631-645. GLBRC
201810.1016/j.ymben.2017.12.007Wong, J., T. de Rond, L. d'Espaux, C. van der Horst, I. Dev, L. Rios-Solis, J. Kirby, H. Scheller, and J. Keasling. 2018. High-titer production of lathyrane diterpenoids from sugar by engineered Saccharomyces cerevisiae, Metab Eng 45, 142-148. JBEI
201810.1002/bbb.1825Yang, B., L. Tao, and C. E. Wyman. 2018. Strengths, challenges, and opportunities for hydrothermal pretreatment in lignocellulosic biorefineries, Biofuels, Bioproducts and Biorefining 12(1), 125-138. BESC
201810.1093/jxb/erx241Yang, J., and M. Udvardi. 2018. Senescence and nitrogen use efficiency in perennial grasses for forage and biofuel production, J Exp Bot 69(4), 855-865. BESC
201710.1016/j.coisb.2017.11.001Adamczyk, P. A., and J. L. Reed. 2017. Escherichia coli as a model organism for systems metabolic engineering, Current Opinion in Systems Biology 6, 80-88. GLBRC
20171111/1751-7915.12463.Adams, M. W., and R. M. Kelly. 2017. The renaissance of life near the boiling point - at last, genetics and metabolic engineering, Microb Biotechnol 10(1), 37-39. 10.BESC
201710.1021/acssuschemeng.7b01203Akinosho, H. O., C. G. Yoo, A. Dumitrache, J. Natzke, W. Muchero, S. D. Brown, and A. J. Ragauskas. 2017. Elucidating the Structural Changes to Populus Lignin during Consolidated Bioprocessing with Clostridium thermocellum, ACS Sustainable Chemistry & Engineering 5(9), 7486-7491. BESC
201710.1021/acssuschemeng.7b00449Akinosho, H., A. Dumitrache, J. Natzke, W. Muchero, S. S. Jawdy, G. A. Tuskan, S. D. Brown, and A. J. Ragauskas. 2017. Effects of Biomass Accessibility and Klason Lignin Contents during Consolidated Bioprocessing in Populus trichocarpa, ACS Sustainable Chemistry & Engineering 5(6), 5075-5081. BESC
201710.1016/j.indcrop.2017.07.021Alameldin, H., A. Izadi-Darbandi, S. A. Smith, V. Balan, A. D. Jones, and M. Sticklen. 2017. Production of Seed-Like Storage Lipids and Increase in Oil Bodies in Corn (Maize; Zea mays L.) Vegetative Biomass, Industrial Crops and Products 108, 526-534. GLBRC
201710.1126/sciadv.1603301Alonso, D. M., S. H. Hakim, S. Zhou, W. Won, O. Hosseinaei, J. Tao, V. Garcia-Negron, A. H. Motagamwala, M. A. Mellmer, K. Huang, C. J. Houtman, N. Labbe, D. P. Harper, C. Maravelias, T. Runge, and J. A. Dumesic. 2017. Increasing the revenue from lignocellulosic biomass: Maximizing feedstock utilization, Sci Adv 3(5), e1603301. GLBRC
201710.1371/journal.pone.0189604Amaike Campen, S., J. Lynn, S. J. Sibert, S. Srikrishnan, P. Phatale, T. Feldman, J. M. Guenther, J. Hiras, Y. T. A. Tran, S. W. Singer, P. D. Adams, K. L. Sale, B. A. Simmons, S. E. Baker, J. K. Magnuson, and J. M. Gladden. 2017. Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger, PLoS One 12(12), e0189604. JBEI
201710.1101/110825Anderson, W., R. Apweiler, A. Bateman, G. A. Bauer, H. Berman, J. A. Blake, N. Blomberg, S. K. Burley, G. Cochrane, V. Di Francesco, T. Donohue, C. Durinx, A. Game, E. Green, T. Gojobori, P. Goodhand, A. Hamosh, H. Hermjakob, M. Kanehisa, R. Kiley, J. McEntyre, R. McKibbin, S. Miyano, B. Pauly, N. Perrimon, M. A. Ragan, G. Richards, Y.-Y. Teo, M. Westerfield, E. Westhof, and P. F. Lasko. 2017. Towards a global support of core data resources for the life sciences, bioRxiv. .GLBRC
2017Ando, D., and H. Garcia Martin. 2017. Two-Scale 13C Metabolic Flux Analysis for Metabolic Engineering. In Synthetic Metabolic Pathways: Methods and Protocols, 333-352. Eds. M. K. Jensen, and J. D. Keasling. Springer New York.JBEI
201710.1111/tpj.13449Angelos, E., C. Ruberti, S. J. Kim, and F. Brandizzi. 2017. Maintaining the factory: the roles of the unfolded protein response in cellular homeostasis in plants, Plant J 90(4), 671-682. GLBRC
201710.1111/gcbb.12428Austin, E. E., K. Wickings, M. D. McDaniel, G. P. Robertson, and A. S. Grandy. 2017. Cover crop root contributions to soil carbon in a no-till corn bioenergy cropping system, GCB Bioenergy 9(7), 1252-1263. GLBRC
201710.1039/c6ee03748hBalch, M. L., E. K. Holwerda, M. F. Davis, R. W. Sykes, R. M. Happs, R. Kumar, C. E. Wyman, and L. R. Lynd. 2017. Lignocellulose fermentation and residual solids characterization for senescent switchgrass fermentation by Clostridium thermocellum in the presence and absence of continuous in situ ball-milling, Energy & Environmental Science 10(5), 1252-1261. BESC
201710.1016/j.carbpol.2016.11.085Bhagia, S., R. Kumar, and C. E. Wyman. 2017. Effects of dilute acid and flowthrough pretreatments and BSA supplementation on enzymatic deconstruction of poplar by cellulase and xylanase, Carbohydr Polym 157, 1940-1948. BESC
201710.1186/s12859-017-1615-yBirkel, G. W., A. Ghosh, V. S. Kumar, D. Weaver, D. Ando, T. W. H. Backman, A. P. Arkin, J. D. Keasling, and H. G. Martin. 2017. The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism, BMC Bioinformatics 18(1), 205. JBEI
201710.1186/s13068-017-0866-1Biswal, A. K., L. Tan, M. A. Atmodjo, J. DeMartini, I. Gelineo-Albersheim, K. Hunt, I. M. Black, S. S. Mohanty, D. Ryno, C. E. Wyman, and D. Mohnen. 2017. Comparison of four glycosyl residue composition methods for effectiveness in detecting sugars from cell walls of dicot and grass tissues, Biotechnol Biofuels 10, 182. BESC
201710.1186/s13068-016-0684-xBiswas, R., C. M. Wilson, R. J. Giannone, D. M. Klingeman, T. Rydzak, M. B. Shah, R. L. Hettich, S. D. Brown, and A. M. Guss. 2017. Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism, Biotechnol Biofuels 10, 6. BESC
201710.1111/1751-7915.12494Blumer-Schuette, S. E., J. V. Zurawski, J. M. Conway, P. Khatibi, D. L. Lewis, Q. Li, V. L. Chiang, and R. M. Kelly. 2017. Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose, Microb Biotechnol 10(6), 1546-1557. BESC
201710.1016/j.cbpa.2017.10.013Bomble, Y. J., C. Y. Lin, A. Amore, H. Wei, E. K. Holwerda, P. N. Ciesielski, B. S. Donohoe, S. R. Decker, L. R. Lynd, and M. E. Himmel. 2017. Lignocellulose deconstruction in the biosphere, Curr Opin Chem Biol 41, 61-70. BESC
201710.1104/pp.16.01322Bouche, F., D. P. Woods, and R. M. Amasino. 2017. Winter Memory throughout the Plant Kingdom: Different Paths to Flowering, Plant Physiol 173(1), 27-35. GLBRC
201710.1021/acs.est.6b04591Breunig, H. M., L. Jin, A. Robinson, and C. D. Scown. 2017. Bioenergy Potential from Food Waste in California, Environ Sci Technol 51(3), 1120-1128. JBEI
201710.1038/s41598-017-08985-wBrunecky, R., B. S. Donohoe, J. M. Yarbrough, A. Mittal, B. R. Scott, H. Ding, L. E. Taylor Ii, J. F. Russell, D. Chung, J. Westpheling, S. A. Teter, M. E. Himmel, and Y. J. Bomble. 2017. The Multi Domain Caldicellulosiruptor bescii CelA Cellulase Excels at the Hydrolysis of Crystalline Cellulose, Sci Rep 7(1), 9622. BESC
201710.1128/mSystems.00015-17Burger, B. T., S. Imam, M. J. Scarborough, D. R. Noguera, and T. J. Donohue. 2017. Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides, mSystems 2(3). GLBRC
201710.1038/srep44150Cao, H., D. Wei, Y. Yang, Y. Shang, G. Li, Y. Zhou, Q. Ma, and Y. Xu. 2017. Systems-level understanding of ethanol-induced stresses and adaptation in E. coli, Sci Rep 7, 44150. BESC
201710.1093/bib/bbx088Cao, H., Q. Ma, X. Chen, and Y. Xu. 2017. DOOR: a prokaryotic operon database for genome analyses and functional inference, Brief Bioinform. BESC
201710.1104/pp.17.00362Carlos Del Rio, J., J. Rencoret, A. Gutierrez, H. Kim, and J. Ralph. 2017. Hydroxystilbenes Are Monomers in Palm Fruit Endocarp Lignins, Plant Physiol 174(4), 2072-2082. GLBRC
201710.1038/srep43925Chen, X., W. C. Chou, Q. Ma, and Y. Xu. 2017. SeqTU: A Web Server for Identification of Bacterial Transcription Units, Sci Rep 7, 43925. BESC
201710.1186/s13068-017-0849-2.Choi, J., D. M. Klingeman, S. D. Brown, and C. D. Cox. 2017. The LacI family protein GlyR3 co-regulates the celC operon and manB in Clostridium thermocellum, Biotechnol Biofuels 10, 163. BESC
201710.1038/npjsba.2016.35Chubukov, V., J. J. Desmarais, G. Wang, L. J. G. Chan, E. E. Baidoo, C. J. Petzold, J. D. Keasling, and A. Mukhopadhyay. 2017. Engineering glucose metabolism of Escherichia coli under nitrogen starvation, NPJ Syst Biol Appl 3, 16035. JBEI
201710.3389/fenrg.2017.00009Chundawat, S. P. S., N. Uppugundla, D. Gao, P. G. Curran, V. Balan, and B. E. Dale. 2017. Shotgun Approach to Increasing Enzymatic Saccharification Yields of Ammonia Fiber Expansion Pretreated Cellulosic Biomass, Frontiers in Energy Research 5. GLBRC
201710.1101/094805Clarkson, S. M., D. M. Kridelbaugh, J. G. Elkins, A. M. Guss, and J. Michener. 2017. Construction and optimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli enables rapid bioconversion of model lignin monomers, bioRxiv. BESC
201710.1002/wsbm.1377Counts, J. A., B. M. Zeldes, L. L. Lee, C. T. Straub, M. W. W. Adams, and R. M. Kelly. 2017. Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms, Wiley Interdiscip Rev Syst Biol Med 9(3). BESC
201710.1016/j.ymben.2017.06.004d'Espaux, L., A. Ghosh, W. Runguphan, M. Wehrs, F. Xu, O. Konzock, I. Dev, M. Nhan, J. Gin, A. Reider Apel, C. J. Petzold, S. Singh, B. A. Simmons, A. Mukhopadhyay, H. Garcia Martin, and J. D. Keasling. 2017. Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks, Metab Eng 42, 115-125. JBEI
201710.1111/nph.14306da Costa, R. M., S. Pattathil, U. Avci, S. J. Lee, S. P. Hazen, A. Winters, M. G. Hahn, and M. Bosch. 2017. A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin, New Phytol 213(4), 1710-1725. BESC
201710.1007/10_2016_45Dahal, S., S. Poudel, and R. A. Thompson. 2017. Genome-Scale Modeling of Thermophilic Microorganisms, Adv Biochem Eng Biotechnol 160, 103-119. BESC
201710.1002/bbb.1745Dale, B. 2017. A sober view of the difficulties in scaling cellulosic biofuels, Biofuels, Bioproducts and Biorefining 11(1), 5-7. GLBRC
201710.1186/s13068-017-0700-9Daly, P., J. M. van Munster, M. J. Blythe, R. Ibbett, M. Kokolski, S. Gaddipati, E. Lindquist, V. R. Singan, K. W. Barry, A. Lipzen, C. Y. Ngan, C. J. Petzold, L. J. G. Chan, S. T. Pullan, S. Delmas, P. R. Waldron, I. V. Grigoriev, G. A. Tucker, B. A. Simmons, and D. B. Archer. 2017. Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments, Biotechnol Biofuels 10, 35. JBEI
201710.1016/j.carbpol.2017.03.062Damm, T., S. Pattathil, M. Gunl, N. D. Jablonowski, M. O'Neill, K. S. Grun, P. M. Grande, W. Leitner, U. Schurr, B. Usadel, and H. Klose. 2017. Insights into cell wall structure of Sida hermaphrodita and its influence on recalcitrance, Carbohydr Polym 168, 94-102. BESC
201710.1021/acs.analchem.6b05004de Raad, M., T. de Rond, O. Rubel, J. D. Keasling, T. R. Northen, and B. P. Bowen. 2017. OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging, Anal Chem 89(11), 5818-5823. JBEI
201710.1038/nchembio.2471de Rond, T., P. Stow, I. Eigl, R. E. Johnson, L. J. G. Chan, G. Goyal, E. E. K. Baidoo, N. J. Hillson, C. J. Petzold, R. Sarpong, and J. D. Keasling. 2017. Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme, Nat Chem Biol 13(11), 1155-1157. JBEI
201710.1111/gcbb.12407DeBruyn, J. M., D. A. Bevard, M. E. Essington, J. Y. McKnight, S. M. Schaeffer, H. L. Baxter, M. Mazarei, D. G. J. Mann, R. A. Dixon, F. Chen, C. Zhuo, Z.-Y. Wang, and C. N. Stewart. 2017. Field-grown transgenic switchgrass (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology, and carbon storage potential, GCB Bioenergy 9(6), 1100-1109. BESC
201710.1016/j.ymben.2017.03.002Degreif, D., T. de Rond, A. Bertl, J. D. Keasling, and I. Budin. 2017. Lipid engineering reveals regulatory roles for membrane fluidity in yeast flocculation and oxygen-limited growth, Metab Eng 41, 46-56. JBEI
2017Dulys-Nusbaum, E. 2017. Timber residue supply for bioenergy in the northern tier of the Great Lakes: determinants and availability. Michigan State University East Lansing, MI.GLBRC
201710.1039/c7gc00346cDumitrache, A., A. Tolbert, J. Natzke, S. D. Brown, B. H. Davison, and A. J. Ragauskas. 2017. Cellulose and lignin colocalization at the plant cell wall surface limits microbial hydrolysis of Populus biomass, Green Chemistry 19(9), 2275-2285. BESC
201710.1038/srep43583Dumitrache, A., D. M. Klingeman, J. Natzke, M. Rodriguez, Jr., R. J. Giannone, R. L. Hettich, B. H. Davison, and S. D. Brown. 2017. Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells, Sci Rep 7, 43583. BESC
201710.1111/pbi.12666Dumitrache, A., J. Natzke, M. Rodriguez, Jr., K. L. Yee, O. A. Thompson, C. R. Poovaiah, H. Shen, M. Mazarei, H. L. Baxter, C. Fu, Z. Y. Wang, A. K. Biswal, G. Li, A. C. Srivastava, Y. Tang, C. N. Stewart, Jr., R. A. Dixon, R. S. Nelson, D. Mohnen, J. Mielenz, S. D. Brown, and B. H. Davison. 2017. Transgenic switchgrass (Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a 2-year comparative analysis of field-grown lines modified for target gene or genetic element expression, Plant Biotechnol J 15(6), 688-697. BESC
201710.1021/acssuschemeng.7b02123Dutta, T., N. G. Isern, J. Sun, E. Wang, S. Hull, J. R. Cort, B. A. Simmons, and S. Singh. 2017. Survey of Lignin-Structure Changes and Depolymerization during Ionic Liquid Pretreatment, ACS Sustainable Chemistry & Engineering 5(11), 10116-10127. JBEI
201710.1080/19336950.2016.1222760Ebert, B., C. Rautengarten, and J. L. Heazlewood. 2017. GDP-L-fucose transport in plants: The missing piece, Channels (Austin) 11(1), 8-10. JBEI
201710.1104/pp.16.01108Eloy, N. B., W. Voorend, W. Lan, M. L. Saleme, I. Cesarino, R. Vanholme, R. A. Smith, G. Goeminne, A. Pallidis, K. Morreel, J. Nicomedes, Jr., J. Ralph, and W. Boerjan. 2017. Silencing CHALCONE SYNTHASE in Maize Impedes the Incorporation of Tricin into Lignin and Increases Lignin Content, Plant Physiol 173(2), 998-1016. GLBRC
201710.1371/journal.pone.0178160Eudes, A., T. Dutta, K. Deng, N. Jacquet, A. Sinha, V. T. Benites, E. E. K. Baidoo, A. Richel, S. E. Sattler, T. R. Northen, S. Singh, B. A. Simmons, and D. Loque. 2017. SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum, PLoS One 12(6), e0178160. JBEI
201710.1038/s41598-017-00234-4Farahi, R. H., A. M. Charrier, A. Tolbert, A. L. Lereu, A. Ragauskas, B. H. Davison, and A. Passian. 2017. Plasticity, elasticity, and adhesion energy of plant cell walls: nanometrology of lignin loss using atomic force microscopy, Sci Rep 7(1), 152. BESC
201710.1016/j.mbs.2016.08.004Faraji, M., and E. O. Voit. 2017. Nonparametric dynamic modeling, Mathematical Biosciences 287, 130-146. BESC
201710.1093/bioinformatics/btx126Faraji, M., and E. O. Voit. 2017. Stepwise inference of likely dynamic flux distributions from metabolic time series data, Bioinformatics 33(14), 2165-2172. BESC
201710.1016/j.jes.2016.10.005Fernandez-Bayo, J. D., J. Toniato, B. A. Simmons, and C. W. Simmons. 2017. Structure and activity of thermophilic methanogenic microbial communities exposed to quaternary ammonium sanitizer, J Environ Sci (China) 56, 164-168. JBEI
201710.3390/molecules22060981.Forman, V., R. Callari, C. Folly, H. Heider, and B. Hamberger. 2017. Production of Putative Diterpene Carboxylic Acid Intermediates of Triptolide in Yeast, Molecules 22(6). GLBRC
201710.1021/jacs.7b06560Fukushima, T., S. Gupta, B. Rad, J. A. Cornejo, C. J. Petzold, L. J. G. Chan, R. A. Mizrahi, C. Y. Ralston, and C. M. Ajo-Franklin. 2017. The Molecular Basis for Binding of an Electron Transfer Protein to a Metal Oxide Surface, J Am Chem Soc 139(36), 12647-12654. JBEI
201710.1039/c7lc00576hGach, P. C., K. Iwai, P. W. Kim, N. J. Hillson, and A. K. Singh. 2017. Droplet microfluidics for synthetic biology, Lab on a Chip 17(20), 3388-3400. JBEI
201710.1186/s13007-017-0172-8Gage, J. L., N. D. Miller, E. P. Spalding, S. M. Kaeppler, and N. de Leon. 2017. TIPS: a system for automated image-based phenotyping of maize tassels, Plant Methods 13, 21. GLBRC
201710.1016/j.copbio.2017.02.015Gall, D. L., J. Ralph, T. J. Donohue, and D. R. Noguera. 2017. Biochemical transformation of lignin for deriving valued commodities from lignocellulose, Curr Opin Biotechnol 45, 120-126. GLBRC
201710.1371/journal.pbio.2004050Gasch, A. P., F. B. Yu, J. Hose, L. E. Escalante, M. Place, R. Bacher, J. Kanbar, D. Ciobanu, L. Sandor, I. V. Grigoriev, C. Kendziorski, S. R. Quake, and M. N. McClean. 2017. Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress, PLoS Biol 15(12), e2004050. GLBRC
201710.1093/femsyr/fox038Gibson, B., J. A. Geertman, C. T. Hittinger, K. Krogerus, D. Libkind, E. J. Louis, F. Magalhaes, and J. P. Sampaio. 2017. New yeasts-new brews: modern approaches to brewing yeast design and development, FEMS Yeast Res 17(4). GLBRC
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